3-ketoacyl-CoA
thiolase
LOCUS AI629711 275 bp mRNA EST 26-APR-1999
DEFINITION 486015C07.x6 486 - leaf primordia cDNA library from Hake lab Zea
mays cDNA, mRNA sequence.
ACCESSION AI629711
NID g4681041
VERSION AI629711.1 GI:4681041
KEYWORDS EST.
SOURCE Zea mays.
ORGANISM Zea mays
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
euphyllophytes; Spermatophyta; Magnoliophyta; Liliopsida; Poales;
Poaceae; Zea.
REFERENCE 1 (bases 1 to 275)
AUTHORS Walbot,V.
TITLE Maize ESTs from various cDNA libraries sequenced at Stanford
University
JOURNAL Unpublished (1999)
COMMENT
Contact: Walbot V
Department of Biological Sciences
Stanford University
855 California Ave, Palo Alto, CA 94304, USA
Tel: 650 723 2227
Fax: 650 725 8221
Email: walbot@stanford.edu
Plate: 486015 row: C column: 07.
FEATURES Location/Qualifiers
source 1..275
/organism="Zea mays"
/cultivar="B73"
/note="Organ: shoot; Vector: Lambda zap; Hake lab cDNA
library."
/db_xref="taxon:4577"
/clone_lib="486 - leaf primordia cDNA library from Hake
lab"
/tissue_type="leaf primordia"
/dev_stage="P7-P11 leaf"
/lab_host="E.coli XL1-Blue MFR'"
BASE COUNT 64 a 82 c 55 g 74 t
ORIGIN
1 accgggcccc ccctcgagtt tttttttttt ttttttaata caaaatcatt ttattcccca
61 attctctccc tacagcgatg gggaaacaat gctaccagtt ccggcaaatt ttggtgggtg
121 tagctttaca tggcgtcctt ggaaagccag ttgtgggtcg agattccccg agcattggtg
181 agctcatcaa cgccgtctcc ccgctcgaac acagcagcag cacccatccc agaacctatg
241 cacatagaaa tcactccgaa ccggcaatcc ttgcc
//
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA63598| (X93015) glyoxysomal beta-ketoacyl-thiolase [... 86 5e-17
gi|2924779 (AC002334) putative 3-ketoacyl-CoA thiolase [Ara... 83 6e-16
dbj|BAA11117| (D70895) 3-ketoacyl-CoA thiolase [Cucurbita sp.] 79 9e-15
emb|CAA47926| (X67696) acetyl-CoA acyltransferase [Cucumis... 75 2e-13
pir||S33637 acetyl-CoA C-acyltransferase (EC 2.3.1.16) prec... 75 2e-13
gi|3169568 (AF062589) 3-keto-acyl-CoA-thiolase 1 [Arabidops... 71 2e-12
gi|3169569 (AF062589) 3-keto-acyl-CoA thiolase 2 [Arabidops... 71 2e-12
gi|2494125 (AC002376) Strong similarity to Cucumis acetyl-C... 69 6e-12
pir||JT0551 acetyl-CoA C-acyltransferase (EC 2.3.1.16), per... 39 0.008
sp|P21775|THIJ_RAT 3-KETOACYL-COA THIOLASE PEROXISOMAL A PR... 39 0.008
emb|CAA46271| (X65148) peroxisomal 3-oxoacyl-CoA thiolase ... 39 0.008
dbj|BAA14107| (D90063) 3-ketoacyl-CoA thiolase B [Rattus no... 39 0.008
gi|205097 (J02749) peroxisomal 3-ketoacyl-CoA thiolase prec... 39 0.008
sp|P07871|THIK_RAT 3-KETOACYL-COA THIOLASE PEROXISOMAL B PR... 39 0.008
pir||B29452 acetyl-CoA C-acyltransferase (EC 2.3.1.16) prec... 39 0.008
ref|NP_001598.1|PACAA| acetyl-Coenzyme A acyltransferase (p... 39 0.008
emb|CAB15272| (Z99120) similar to acetyl-CoA C-acyltransfer... 38 0.023
sp|P27796|THIK_YEAST 3-KETOACYL-COA THIOLASE PEROXISOMAL PR... 36 0.052
pdb|1AFW|A Chain A, The 1.8 Angstrom Crystal Structure Of T... 36 0.052
pdb|1PXT|A Saccharomyces cerevisiae >gi|640368|pdb|1PXT|B S... 36 0.052
gi|148245 (M87049) small (beta) subunit of the fatty acid-o... 36 0.069
pir||XUEC acetyl-CoA C-acyltransferase (EC 2.3.1.16) - Esch... 36 0.069
sp|P21151|THIK_ECOLI 3-KETOACYL-COA THIOLASE (FATTY OXIDATI... 36 0.069
emb|CAB40810.1| (X52837) fadA gene product (AA 1 - 387) [Es... 36 0.069
gi|841446 (U25733) cytochrome b [Lophorina superba] 36 0.090
gi|840941 (U15204) cytochrome b [Paradisaea raggiana] >gi|8... 34 0.20
gi|840939 (U15203) cytochrome b [Paradisaea rudolphi] 34 0.20
gi|840935 (U15201) cytochrome b [Cicinnurus regius] 34 0.20
gi|841454 (U25737) cytochrome b [Paradisaea minor] 34 0.20
gi|841452 (U25736) cytochrome b [Paradisaea rubra] 34 0.20
gi|840937 (U15202) cytochrome b [Seleucidis melanoleuca] 34 0.20
gb|AAD17670.1| (AF074578) cytochrome b [Riparia riparia] 34 0.20
gb|AAD17676.1| (AF074584) cytochrome b [Atticora fasciata] 34 0.20
gb|AAD27029.1|AF095307_1 (AF095307) cytochrome b [Marcuseni... 34 0.27
gi|841444 (U25732) cytochrome b [Lophorina superba] 34 0.27
gb|AAD17669.1| (AF074577) cytochrome b [Hirundo rustica] 34 0.27
gb|AAD17674.1| (AF074582) cytochrome b [Petrochelidon spilo... 34 0.27
gb|AAD17682.1| (AF074590) cytochrome b [Neochelidon tibialis] 34 0.27
gb|AAD17683.1| (AF074591) cytochrome b [Petrochelidon pyrrh... 34 0.27
gb|AAD40918.1|AF108790_1 (AF108790) cytochrome b [Pinarolox... 34 0.27
emb|CAA52314| (X74255) cytochrome b [Diphyllodes magnificus] 34 0.35
emb|CAA52318| (X74259) cytochrome b [Lanius ludovicianus] 34 0.35
emb|CAA52319| (X74260) cytochrome b [Vireo olivaceus] 34 0.35
gi|840933 (U15200) cytochrome b [Diphyllodes respublica] 34 0.35
gi|3676560 (AF081958) cytochrome b [Cyclarhis gujanensis oc... 34 0.35
gi|3676562 (AF081959) cytochrome b [Vireolanius leucotis le... 34 0.35
gb|AAD33699.1| (AF136724) cytochrome b [Stiphrornis erythro... 34 0.35
gb|AAD33700.1| (AF136725) cytochrome b [Stiphrornis erythro... 34 0.35
gb|AAD33704.1| (AF136729) cytochrome b [Stiphrornis sanghen... 34 0.35
gb|AAD17678.1| (AF074586) cytochrome b [Notiochelidon cyano... 34 0.35
emb|CAA63598| (X93015) glyoxysomal beta-ketoacyl-thiolase [Brassica napus]
Length = 462
Score = 86.2 bits (210), Expect = 5e-17
Identities = 39/48 (81%), Positives = 43/48 (89%)
Frame = -1
Query: 275 GKDCRFGVISMCIGSGMGAAAVFERGDGVDELTNARGISTHNWLSKDA 132
GKDCRFGV+SMCIG+GMGAAAVFERGDGVDEL NAR + +H LSKDA
Sbjct: 414 GKDCRFGVVSMCIGTGMGAAAVFERGDGVDELRNARKVESHGLLSKDA 461
gi|2924779 (AC002334) putative 3-ketoacyl-CoA thiolase [Arabidopsis thaliana]
>gi|2981616|dbj|BAA25248| (AB008854) 3-ketoacyl-CoA
thiolase [Arabidopsis thaliana]
>gi|2981618|dbj|BAA25249| (AB008855) 3-ketoacyl-CoA
thiolase [Arabidopsis thaliana]
Length = 462
Score = 82.7 bits (201), Expect = 6e-16
Identities = 38/48 (79%), Positives = 41/48 (85%)
Frame = -1
Query: 275 GKDCRFGVISMCIGSGMGAAAVFERGDGVDELTNARGISTHNWLSKDA 132
GKDCRFGV+SMCIG+GMGAAAVFERGDGVDEL NAR + LSKDA
Sbjct: 414 GKDCRFGVVSMCIGTGMGAAAVFERGDGVDELRNARKVEAQGLLSKDA 461