homomeric acetyl-coenzyme A carboxylase
LOCUS RICR1911A 366 bp mRNA EST 07-FEB-1996
DEFINITION Rice
cDNA, partial sequence (R1911_1A), mRNA sequence.
ACCESSION D39088
NID g568251
KEYWORDS EST; EST(expressed sequence tag).
SOURCE Oryza sativa (strain:Nipponbare) root
cDNA to mRNA.
ORGANISM
Oryza sativa
Eukaryotae; mitochondrial
eukaryotes; Viridiplantae;
Charophyta/Embryophyta group;
Embryophyta; vascular plants; seed
plants; Magnoliophyta; Liliopsida;
Poales; Poaceae; Oryza.
REFERENCE 1
(bases 1 to 366)
AUTHORS
Sasaki,T., Miyao,A. and Yamamoto,K.
TITLE
Rice cDNA from root
JOURNAL
Unpublished (1994)
REFERENCE 2
(bases 1 to 366)
AUTHORS
Sasaki,T.
TITLE
Direct Submission
JOURNAL
Submitted (28-OCT-1994) to the DDBJ/EMBL/GenBank databases. Takuji
Sasaki, National Institute of
Agrobiological Resources, Rice Genome
Research Program; Kannondai 2-1-2,
Tsukuba, Ibaraki 305, Japan
(Tel:0298-38-7441, Fax:0298-38-7468)
COMMENT PROJECT ='RGP'
Submitted (28-OCT-1994) to DDBJ
by:
Takuji Sasaki
National Institute of
Agrobiological Resources
Rice Genome Research Program
2-1-2, Kannondai,
Tsukuba, Ibaraki, 305
Japan
Phone: 0298-38-7441
Fax : 0298-38-7468.
FEATURES Location/Qualifiers
source 1..366
/organism="Oryza
sativa"
/strain="Nipponbare"
/db_xref="taxon:4530"
/dev_stage="root"
BASE
COUNT 118 a 62 c
91 g 90 t 5 others
ORIGIN
1 aaaaggcaat
gttctggaac cgcaagggtt aattgagatc aagttcaggt cagaggaact
61 ccaggattgc atgagtcggc ttgacccaac attaattgat ctgaaagcaa aactcgnagt
121 agcaaataaa aatggaagtg ctgacacaaa atcgcttcaa gaaaatatag aagctcgaac
181 aaaacagttg atgcctctat atactcagat tgcgatacgg tttgctgnat tgcatgatac
241 atccctcaga atggctgcna aaggtgtaat taaggaagtt gtgggcttgg aagnatcacg
301 gtctttcctc tataagagat tacggaggng ggtctctgag gatgttcttg caaaggaatt
361 agggct
//
BLASTX 5-18-99: homomeric acetyl-coenzyme
A carboxylase
Score E
Sequences
producing significant alignments: (bits)
Value
gi|2827150 (AF029895) acetyl-coenzyme A carboxylase
[Triticum a... 178 2e-44
emb|CAA80822| (Z24449) acetyl CoA carboxylase [Zea
mays] 176 4e-44
gi|854731 (U19183) acetyl-coenzyme A carboxylase [Zea
mays] 176 4e-44
pir||S34636 acetyl-CoA carboxylase (EC 6.4.1.2) - maize
(fragme... 176 4e-44
gi|1335966 (U58598) acetyl CoA carboxylase [Zea
mays] 176 5e-44
pir||S42660 acetyl-CoA carboxylase (EC 6.4.1.2) - wheat
(fragme... 172 8e-43
dbj|BAA07012| (D34630) acetyl-CoA carboxylase [Arabidopsis
thal... 136 6e-32
gi|600178 (L27074) acetyl-CoA carboxylase [Arabidopsis
thaliana... 136 6e-32
emb|CAA54683| (X77576) acetyl-CoA carboxylase [Brassica
napus] 132 1e-30
gi|495725 (L25042) acetyl-CoA carboxylase [Medicago
sativa] 131 2e-30
pir||S46201 acetyl-CoA carboxylase - rape 131 3e-30
pir||A57710 acetyl-CoA carboxylase (EC 6.4.1.2) - wheat
>gi|514... 130 5e-30
gi|1066859 (L49020) acetyl-CoA carboxylase [Glycine
max] 128 2e-29
gi|1244566 (U39321) acetyl-CoA carboxylase [Triticum
aestivum] ... 127 3e-29
gi|992917 (L42814) acetyl CoA carboxylase [Glycine
max] 124 2e-28
sp|Q28559|COAC_SHEEP ACETYL-COA CARBOXYLASE (ACC) [CONTAINS:
BI... 102 1e-21
sp|P11497|COAC_RAT ACETYL-COA CARBOXYLASE (ACC) (CONTAINS:
BIOT... 101 2e-21
sp|P11029|COAC_CHICK ACETYL-COA CARBOXYLASE (ACC) (CONTAINS:
BI... 101 2e-21
ref|NP_000655.1|PACACA| acetyl-Coenzyme A carboxylase alpha
>gi... 101 2e-21
ref|NP_001084.1|PACACB| acetyl-Coenzyme A carboxylase beta
>gi|... 99 9e-21
pir||S41121 acetyl-CoA carboxylase (EC 6.4.1.2) - human
>gi|452... 99 9e-21
emb|CAA75926| (Y15996) acetyl-CoA carboxylase [Emericella
nidul... 98 3e-20
sp|Q00955|COAC_YEAST ACETYL-COA CARBOXYLASE (ACC) (CONTAINS:
BI... 94 3e-19
gi|171504 (M92156) acetyl-CoA carboxylase
[Saccharomyces cerevi... 94 3e-19
emb|CAA88647| (Z48755) unknown [Saccharomyces
cerevisiae] 94 5e-19
sp|P32874|HFA1_YEAST HFA1 PROTEIN >gi|2131275|pir||S55089 HFA1
... 94 5e-19
dbj|BAA24410| (D78165) acetyl-coenzyme A carboxylase like
carbo... 94 5e-19
dbj|BAA25799| (AB004329) acetyl-CoA carboxylase [Rattus
norvegi... 89 2e-17
pir||A48757 acetyl-CoA carboxylase (EC 6.4.1.2) -
Cyclotella cr... 87 4e-17
sp|P78820|COAC_SCHPO ACETYL-COA CARBOXYLASE (ACC) (CONTAINS:
BI... 77 5e-14
emb|CAB16395.1| (Z99261) acetyl-coa carboxylase
[Schizosaccharo... 77 5e-14
pir||S49991 acetyl-CoA carboxylase (EC 6.4.1.2) - smut
fungus (... 75 2e-13
gi|2429520 (AF025469) Similar to acetyl-CoA
carboxylase; coded ... 61 3e-09
gi|2827150 (AF029895) acetyl-coenzyme A
carboxylase [Triticum aestivum]
Length = 2311
Score =
178 bits (446), Expect = 2e-44
Identities = 94/120 (78%), Positives =
108/120 (89%), Gaps = 2/120 (1%)
Frame = +2
Query: 2
KGNVLEPQGLIEIKFRSEELQDCMSRLDPTLIDLKAKLX-VANKNGSA-DTKSLQENIEA 175
KGNVLEPQGLIEIKFRSEELQ+CM RLDP
LI+LKAKL V ++NGS +++SLQ++IEA
Sbjct: 2083
KGNVLEPQGLIEIKFRSEELQECMGRLDPELINLKAKLQGVKHENGSLPESESLQKSIEA 2142
Query:
176
RTKQLMPLYTQIAIRFAXLHDTSLRMAAKGVIKEVVGLEXSRSFLYKRLRRXVSEDVLAK 355
R KQL+PLYTQIA+RFA
LHDTSLRMAAKGVIK+VV E SRSF YKRLRR
+SEDVLAK
Sbjct: 2143
RKKQLLPLYTQIAVRFAELHDTSLRMAAKGVIKKVVDWEDSRSFFYKRLRRRISEDVLAK 2202
Query: 356 EL 361
E+
Sbjct: 2203
EI 2204
emb|CAA80822| (Z24449) acetyl CoA carboxylase
[Zea mays]
Length = 1625
Score =
176 bits (443), Expect = 4e-44
Identities = 94/120 (78%), Positives =
105/120 (87%), Gaps = 2/120 (1%)
Frame = +2
Query: 2
KGNVLEPQGLIEIKFRSEELQDCMSRLDPTLIDLKAKLXVANK-NGSA-DTKSLQENIEA 175
KGNVLEPQGLIEIKFRSEELQDCM RLDP
LI+LKAKL N NGS D + ++++IEA
Sbjct: 1398
KGNVLEPQGLIEIKFRSEELQDCMGRLDPELINLKAKLQDVNHGNGSLPDIEGIRKSIEA 1457
Query: 176
RTKQLMPLYTQIAIRFAXLHDTSLRMAAKGVIKEVVGLEXSRSFLYKRLRRXVSEDVLAK 355
RTKQL+PLYTQIAIRFA
LHDTSLRMAAKGVIK+VV E SRSF YKRLRR
++EDVLAK
Sbjct: 1458
RTKQLLPLYTQIAIRFAELHDTSLRMAAKGVIKKVVDWEESRSFFYKRLRRRIAEDVLAK 1517
Query:
356 EL 361
E+
Sbjct: 1518
EI 15192150