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Bulletin E3170
Michigan Fresh: Tomato Diseases in the Home Garden

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March 31, 2025 - <gregers7@msu.edu> and <galbra53@msu.edu>,

Tomatoes are one of the most popular crops grown in home gardens. When growing tomatoes, it is important to be able to identify the different biotic or abiotic diseases that may threaten the health of the plants. Biotic diseases, meaning diseases caused by fungal, bacterial, or other living pathogens, are mainly dependent on moisture, whether that is in the form of rain, high humidity, or overhead irrigation. Splashing water on the infected leaves from overhead watering spreads fungal spores and bacteria to nearby plants. Watering late in the day or evening causes the plants to stay wet overnight providing an environment for diseases to flourish. Limiting the risk of biotic diseases can be done by staking tomato plants for better air circulation, avoiding overhead watering, not planting tomatoes in the same place each year and disposing of infected plant material in the trash. Some tomato varieties have been bred for their resistance to some of these diseases. Read seed packages carefully and look for resistant varieties if fungal or bacterial problems have been a problem in previous years. For ideas when selecting a variety, check out this comprehensive list of disease resistant tomato varieties provided by Cornell.

Septoria leaf spot

Septoria leaf spot .jpg
Photo credit: Bruce Watt, University of Maine, bugwood.org

Symptoms:
• Small, dark spots appear on the lowest leaves and move up the plant
• Spots develop yellow halos
• Leaves turn yellow then brown before falling off
• The fruit is not damaged from the pathogen

Early blight

Early blight tomato digital document .jpg
Photo credit: Howard E. Schwartz, Colorado State University, bugwood.org

Symptoms:
• Dark spots with a bullseye appearance appear on older leaves
• Leaves turn yellow and fall off
• Stems may have dark lesions
• Stem end of fruit may have dark brown leathery spots with concentric rings
• Infected fruit falls off

Late blight

Late blight tomato digital document .jpg
Photo credit: Elizabeth Bush, Virginia Polytechnic Institute and State University, bugwood.org
Late blight 2 tomato digital document.jpg
Photo credit: Thirunarayanan Perumal, Banaras Hindu University, bugwood.org

Symptoms:

  • Pale green to brown spots with a purplish cast on the leaves
  • Spots enlarge, turn brown to purple-black
  • Yellow or green halos can encircle the spots
  • Leaves shrivel and die
  • Lesions on the stems can grow rapidly and kill the stem
  • Rotting begins near the stem end of the fruit
  • Grey-green to brown irregularly shaped spots appear and rapidly grow on fruit

Note: Early blight and late blight, despite the name, occur at any
time of the growing season if the right conditions are present.

Anthracnose

Anthracnose tomato digital document .jpg
Photo credit: Clemson University - USDA Cooperative Extension Slide Series, bugwood.org

Symptoms: 

  • Leavers are not damaged
  • Small, slightly depressed, water-soaked spots appear on fruit
  • Spots enlarge, become sunken, and develop concentric rings
  • Tiny black spots may appear in the lesions
  • Large rotting areas may appear

Bacterial Spot 

Bacterial spot tomato digital document .jpg
Photo credit: Clemson University - USDA Cooperative Extension Slide Series, bugwood.org

Symptoms: 

  • Small, dark, water-soaked spots on leaves
  • Yellowing leaves
  • Leaf loss
  • Fruit develops small, dark blisters that can look like scabs

Bacterial Speck 

Bacterial speck tomato dd .jpg
Photo credit: Gerald Holmes, Strawberry Center, Cal Poly San Luis Obispo, bugwood.org
Bacterial spot second picture .jpg
Photo credit: University of Wisconsin Madison

Symptoms: 

  • Small, black spots on underside of leaves
  • Spots may have yellow rings
  • Dark specks on fruit 

Bacterial Canker

Bacterial canker tomato digital document .jpg
Photo credit: Heinz USA, bugwood.org
Bacterial canker second image .jpg
Photo credit: Mary Ann Hansen, Virginia Polytechnic Institute and State University, bugwood.org

Symptoms: 

  • Edges of leaves turn brown with yellow fringe
  • Vascular tissue inside stem turns brown
  • Plant wilting
  • Fruit may have raised light-colored spots

Once the biotic disease has been identified, the right control measures can be put in place to minimize crop loss. MSU has many resources related to control of specific pathogens - see the list of fact sheets and articles below: 

Important: Most fungicides should be applied before or at the first appearance of disease symptoms. When using pesticides, read and follow all label directions. Use of chemical names does not imply endorsement of these products by MSU Extension. 

Abiotic diseases are not caused by living organisms, such as fungus, bacteria, or viruses. Instead they are caused by environmental factors, which may include physical factors such as moisture and temperature, or chemical factors, involving nutrients, herbicides, or pH. 

Blossom End Rot 

Blossom end rot tomato picture .jpg
Photo credit: Whitney Cranshaw, Colorado State University, bugwood.org

Symptoms: 

  • Dry, sunken decay on the bottom, or blossom end, of the fruit
  • Usually seen on the first tomatoes of the season 

This disorder is caused by a lack of calcium (Ca) in the fruit due to uneven distribution throughout the plant. Though a calcium deficiency in the soil is not commonly the cause, it can pay to conduct a soil test to determine if calcium is needed. 

The more common cause is inconsistent watering, usually wet periods followed by dry periods. Calcium does not move very well through the plant and can become "stuck" in one part of the plant before it reaches the fruit. Consistent watering will help provide a continuous supply of calcium through the plant. 

Grow tomatoes in well-drained soil and apply fertilizers according to soil test recommendations. Excess nitrogen may also lead to blossom end rot as calcium may be devoted to excessive vegetative growth instead of fruit development. 

Many calcium foliar sprays are available; however, this is only a quick fix. Calcium is better taken up by the roots of the plant rather than through the foliage. If a foliar calcium spray is used, it should be applied to the younger leaves of the plant. 

Herbicide Drift

Tomatoes are particularly susceptible to herbicide drift damage. Vapor drift from herbicides such as 2,4-D and glyphosate can travel long distances in high temperature conditions, even without wind. The tomatoes rarely recover unless herbicide exposure is minimal - if drift damage is severe, plants should be removed and replaced. 

Symptoms vary based on which herbicide has drifted. Two of the most common culprits for herbicide drift damage are: 

  • Glyphosate 
    • Yellowing begins at base of leaflets
    • Leaves turn brown and die
Glyphosate herbicide drift .jpg
Photo credit: Rebecca A. Melanson, Mississippi State University Extension, bugwood.org
  • Growth Regulator (Group 4) Herbicides - 2,4-D, dicamba, etc. 
    • Curling, twisted stems or leaves
    • Stunted growth 
Other herbicide drift .jpg
Photo credit: Paul Bachi, University of Kentucky Research and Education Center, bugwood,org

In conclusion, there are numerous diseases that can afflict tomatoes, both biotic and abiotic in nature. Proper identification can help inform next steps forward in alleviating the problem. Implementing bet cultural control practices, such as staking tomato plants, consistent watering, rotating planting locations, proper use of fertilizers, and purchasing disease resistant varieties can help ensure a successful crop of tomatoes. 

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